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Scientists from Wageningen UR and other institutes are proposing a new research model - the turnover model - as a way of answering the question why there are always so many plant species in tropical rainforests.

In their publication in New Phytologist magazine, the Dutch, British and Swiss scientists show that major evolutionary changes, such as the origin of large groups of species, occur with a reasonably constant frequency while the origin of new species is an explosive process.

Various models

Darwin’s contemporary Alfred Russel Wallace already argued that the Tropics are, in essence, a museum of biodiversity. As tropical climates are stable, Wallace suggested that species would gradually increase in number over longer time periods, the so-called museum model. More recently, however, it was suggested that the Pleistocene ice ages, and the impact thereof on the climate in the Tropics, resulted in recent explosions of speciation, the so-called cradle model.

Both models are supported by previous research into patterns of diversification in tropical plants. This research is performed by means of reconstructed ‘phylogenetic trees’; genealogical trees that show the interrelated  descent of plant species. Where analyses of plant families focused on studying as many evolutionary lines as possible from the family, diversity was shown to increase gradually. For instance, the development of diversity in important tropical plant groups such as palm trees, the leguminous family and the soursop family, appear to follow the museum model. However, within these large plant families there are also plant genera that seem to follow the cradle model: so-called radiations in which many different species developed recently and over a short period of time.

Equatiing seems impossible

Equating these two models seems an impossible task. How can a large plant family that presents an explosive increase in the number of species diversify as an entire family following the museum model? The answer lies in analysing more species per family, and better modelling speciation over long periods in evolution via the computer.

Mahogany trees

Scientists from Wageningen UR, Kew (London) and Zürich compiled the largest amount of data so far for the Meliaceae , or mahogany family. This family mainly grows in the Tropics, and is known for valuable wood such as mahogany and Spanish cedar. Parts of the nuclear and chloroplast genome of approximately 35% of the species were sequenced; a technology in which all the building blocks of the DNA are mapped.

The analysis of evolutionary diversification showed that the diversity of larger groups, such as plant genera and families, does develop in accordance with the museum model, i.e., with a certain constant frequency in the origin of new branches. The scientists showed that, in addition to this ‘museum fundament’, the origin of individual species is an explosive process which occurs in accordance with the cradle model.

‘Young’ species

The research shows that the mahogany family developed approximately 68 million years ago. The circa 200 mahogany species that grow in the South American rainforests are largely the result of two explosions in speciation (radiations) that occurred independently in two evolutionary lines in the late Miocene epoch, which was less than 10 million years ago.

An interesting aspect of this explosive origin of large numbers of species within the mahogany family is that it involves two different groups within the family which independently evolved the same ecological adaptations, such as plant height and an adaptation of seeds to the same animal species that distribute them. In addition, the two groups show a similar speed of speciation. These abrupt increases in speciation speed occurred after the mahogany family had left its original habitat (tropical dry forests and seasonal forests) and colonised the rainforests, where they were faced with different climate conditions.

New model for evolution

The results of the study show that most mahogany species in the Tropics are relatively recent. It can be assumed that this also applies to other families. The authors propose a new model, the turnover model, in which the number of evolutionary lines increases with a more or less constant speed, while speciation occurs separately and in a more explosive way.

Source: Wageningen University [June 19, 2015]

Placental mammals consist of three main groups that diverged rapidly, evolving in wildly different directions: Afrotheria (for example, elephants and tenrecs), Xenarthra (such as armadillos and sloths) and Boreoeutheria (all other placental mammals). The relationships between them have been a subject of fierce controversy with multiple studies coming to incompatible conclusions over the last decade leading some researchers to suggest that these relationships might be impossible to resolve.

There are thus many outstanding questions such as which is the oldest sibling of the three? Did the mammals go their separate ways due to South America and Africa breaking apart? And if not, when did placentals split up?

"This has been one of the areas of greatest debate in evolutionary biology, with many researchers considering it impossible to resolve," said lead author Dr Tarver of Bristol's School of Earth Sciences. "Now we've proven these problems can be solved -- you just need to analyse genome-scale datasets using models that accurately reflect genomic evolution."

The researchers assembled the largest mammalian phylogenomic dataset ever collected before testing it with a variety of models of molecular evolution, choosing the most robust model and then analysing the data using several supercomputer clusters at the University of Bristol and the University of Texas Advanced Computing Centre. "We tested it to destruction," said Dr Tarver. "We threw the kitchen sink at it."

"A complication in reconstructing evolutionary histories from genomic data is that different parts of genomes can and often do give conflicting accounts of the history," said Dr Siavash Mirarab at the University of California San Diego, USA. "Individual genes within the same species can have different histories. This is one reason why the controversy has stood so long -- many thought the relationships couldn't be resolved."

To address the complexities of analysing large numbers of genes shared among many species, the researchers paired two fundamentally different approaches -- concatenated and coalescent-based analyses -- to confirm the findings. When the dust settled, the team had a specific family tree showing that Atlantogenata (containing the sibling groups of African Afrotheria and the South American Xenarthra) is the sister group to all other placentals.

Because many conflicting family trees have already been published, the team then gathered three of the most influential rivals and tested them against each other with the same model. All of the previous studies suddenly fell into line, their data agreeing with Tarver and colleagues.

With the origins of the family tree resolved, what does this mean for placental mammals? The researchers folded in another layer -- a molecular clock analysis. "The molecular clock analysis uses a combination of fossils and genomic data to estimate when these lineages diverged from each other," said author Dr Mario Dos-Reis of Queen Mary London, UK. "The results show that the afrotherians and xenarthrens diverged from one another around 90 million years ago."

Previously, scientists thought that when Africa and South America separated from each other over 100 million years ago, they broke up the family of placental mammals, who went their separate evolutionary ways divided by geography. But the researchers found that placental mammals didn't split up until after Africa and South America had already separated.

"We propose that South America's living endemic Xenarthra (for exmaple, sloths, anteaters, and armadillos) colonized the island-continent via overwater dispersal," said study author Dr Rob Asher of the University of Cambridge, UK.

Dr Asher suggests that this isn't as difficult as you might think. Mammals are among the great adventurers of the animal kingdom, and at the time the proto-Atlantic was only a few hundred miles wide. We already know that New World monkeys crossed the Atlantic later, when it was much bigger, probably on rafts formed from storm debris. And, of course, mammals repeatedly colonised remote islands like Madagascar.

"You don't always need to overturn the status quo to make a big impact," said Dr Tarver. "All of the competing hypotheses had some evidence to support them -- that's precisely why it was the source of such controversy. Proving the roots of the placental family tree with hard empirical evidence is a massive accomplishment."

The findings are published in Genome Biology and Evolution journal.

Source: University of Bristol [February 15, 2016]

Scientists have developed the largest ever family tree of a major group of flowering plants called monocots, which could help protect their diversity.

Monocots account for a quarter of all flowering plants. They are among the most diverse and economically important plants on the planet, but their evolutionary lines have never been properly mapped. Monocots include staples such as corn, rice, wheat and barley; many tropical fruits such as pineapples and bananas; and other foods such as dates and sugarcane. Monocots such as grasses, bamboo, palms, and their derivations including fibres, are used as key building materials in many countries such as in China.

Now, researchers at Imperial College London have created the most up-to-date family tree or phylogenetic tree, which traces the lines of evolutionary descent of monocots. The researchers analysed DNA samples from across the globe, aiming to determine what factors affected the diversity of monocot species.

Their work could help scientists to conserve the biodiversity of monocots and lead to new types of uses for these plants, such as in the development of new medicines.

Professor Vincent Savolainen, study co-author from the Department of Life Sciences at Imperial College London, said: "Monocots are so important in our lives, providing us with essential food and building materials. Our study is not only the most detailed family tree of monocot species ever developed, it is also importantly helping us to understand what factors affect their diversity. This could lead to better methods for conserving and protecting them.

"It may also lead to new uses for them such as in medicines. Sometimes the best active compound to use in medicine is found in a different species to the one in which it was initially discovered. Therefore, testing close evolutionary relatives may reveal a slightly different molecule that has a stronger effect in combatting one particular disease."

As expected, the team in today's study found that biological factors - such as the way different monocots evolved to take advantage of their environment - played a part in their diversity. However, the researchers discovered that the most important factors in the diversity of monocots in any given region were geographical factors such as the habitat size, its latitude, and altitude.

In particular, they found that the size of the habitat accounted for a third of the species diversity. They suggest this is likely because a bigger habitat means that there are generally more resources and less competition, which enables more species to thrive together rather than compete against each other. They also found that species diversity was reduced at higher altitudes. This may be because temperatures are lower and there is less water available, which causes fiercer competition among monocots for fewer resources.

The researchers were also able to verify previous findings that monocot species are most varied around the equator, and that the closer monocots are to the poles, the fewer species are available. This might be due to higher UV radiation at the equator, causing more genetic mutations and species variation in equatorial regions as a result.

This research analyses 1,987 of the 2,713 types of monocot worldwide. Researchers in this field will now look to increase their sampling to ultimately encompass the roughly 400,000 plant species, to create the entire botanical 'tree of life'.

The study was published in >Botanical Journal of the Linnean Society.

Author: Caroline Brogan | Source: Imperial College London [November 09, 2016]

In a remarkable technical feat, researchers have sequenced DNA from fossils in Spain that are about 300,000 to 400,000 years old and have found an ancestor—or close relative—of Neanderthals. The nuclear DNA, which is the oldest ever sequenced from a member of the human family, may push back the date for the origins of the distinct ancestors of Neanderthals and modern humans, according to a presentation here yesterday at the fifth annual meeting of the European Society for the study of human evolution.

Ever since researchers first discovered thousands of bones and teeth from 28 individuals in the mid-1990s from Sima de los Huesos (“pit of bones”), a cave in the Atapuerca Mountains of Spain, they had noted that the fossils looked a lot like primitive Neanderthals. The Sima people, who lived before Neanderthals, were thought to have emerged in Europe. Yet their teeth, jaws, and large nasal cavities were among the traits that closely resembled those of Neanderthals, according to a team led by paleontologist Juan-Luis Arsuaga of the Complutense University of Madrid. As a result, his team classified the fossils as members of Homo heidelbergensis, a species that lived about 600,000 to 250,000 years ago in Europe, Africa, and Asia. Many researchers have thought H. heidelbergensis gave rise to Neanderthals and perhaps also to our species, H. sapiens, in the past 400,000 years or so.

But in 2013, the Sima fossils’ identity suddenly became complicated when a study of the maternally inherited mitochondrial DNA (mtDNA) from one of the bones revealed that it did not resemble that of a Neanderthal. Instead, it more closely matched the mtDNA of a Denisovan, an elusive type of extinct human discovered when its DNA was sequenced from a finger bone from Denisova Cave in Siberia. That finding was puzzling, prompting researchers to speculate that perhaps the Sima fossils had interbred with very early Denisovans or that the “Denisovan” mtDNA was the signature of an even more ancient hominin lineage, such as H. erectus. At the time, researchers at the Max Planck Institute for Evolutionary Anthropology in Leipzig, Germany, who had obtained the mtDNA announced that they would try to sequence the nuclear DNA of the fossils to solve the mystery.

After 2 years of intense effort, paleogeneticist Matthias Meyer of the Max Planck Institute for Evolutionary Anthropology has finally sequenced enough nuclear DNA from fossils of a tooth and a leg bone from the pit to solve the mystery. The task was especially challenging because the ancient DNA was degraded to short fragments, made up of as few as 25 to 40 single nucleotides. (Nucleotides—also known as base pairs—are the building blocks of DNA.) Although he and his colleagues did not sequence the entire genomes of the fossils, Meyer reported at the meeting that they did get 1 million to 2 million base pairs of ancient nuclear DNA.

They scanned this DNA for unique markers found only in Neanderthals or Denisovans or modern humans, and found that the two Sima fossils shared far more alleles—different nucleotides at the same address in the genome—with Neanderthals than Denisovans or modern humans. “Indeed, the Sima de los Huesos specimens are early Neanderthals or related to early Neanderthals,” suggesting that the split of Denisovans and Neanderthals should be moved back in time, Meyer reported at the meeting.

Researchers at the meeting were impressed by this new breakthrough in ancient DNA research. “This has been the next frontier with ancient DNA,” says evolutionary biologist Greger Larson of the University of Oxford in the United Kingdom.

The close affinity with Neanderthals, but not with Denisovans or modern humans, suggests that the lineage leading to Neanderthals was separate from other archaic humans earlier than most researchers have thought. That means that the ancestors of modern humans also had to split earlier than expected from the population that gave rise to Neanderthals and Denisovans, who were more closely related to each other than they were to modern humans. (Although all three groups interbred at low levels after their evolutionary paths diverged—and such interbreeding may have been the source of the Denisovan mtDNA in the first Sima fossil whose DNA was sequenced.) Indeed, Meyer suggested in his talk that the ancestors of H. sapiens may have diverged from the branch leading to Neanderthals and Denisovans as early as 550,000 to 765,000 years ago, although those results depend on different mutation rates in humans and are still unpublished.

That would mean that the ancestors of humans were already wandering down a solitary path apart from the other kinds of archaic humans on the planet 100,000 to 400,000 years earlier than expected. “It resolves one controversy—that they’re in the Neanderthal clade,” says paleoanthropologist Chris Stringer of the Natural History Museum in London. “But it’s not all good news: From my point of view, it pushes back the origin of H. sapiens from the Neanderthals and Denisovans.” The possibility that humans were a distinct group so early shakes up the human family tree, promising to lead to new debate about when and where the branches belong.

Author: Ann Gibbons | Source: ScienceMag/AAAS [September 11, 2015]

Archaeologists have uncovered a 2000-year-old tomb believed to contain a wealthy father and son who were artisan weavers by trade and walked with the same “pigeon-toed” feet.

The men were laid to rest in an Iron Age stone cist close to the National Trust for Scotland’s (NTS) House of the Binns near Linlithgow.

One skeleton belonged to a man aged around 40 when he died between 92BC-65AD, while his relative was around 20 when he died some time later, 44BC-79AD, and his body was pushed in alongside him.

Skeletal analysis shows both men stood around 5ft 5in tall and suffered from worn teeth associated with weaving.

They also shared an unusual anomaly of the muscle attachment in the upper leg, which would have caused their legs to rotate inwards and made them walk with their toes turned in – pigeon-toed.

The older man was buried clutching an oval-shaped iron brooch to his left shoulder. Experts say it showed “incredibly rare” evidence of thread from his cloak.

NTS archaeologist Daniel Rhodes said the discovery was “exciting in its rarity”.

He said: “The first skeleton was an adult male, aged around 40 years, with wear on his teeth which suggests he may have been a weaver.

“The younger man was around 20 years old. They were intentionally buried in the same place and when you look at the date range they could be father and son.

“The younger man also suffered from worn teeth, and they both shared the same family leg deformity. There is no sign of disease so it probably didn’t cause severe damage or disability in life, but they may have been pigeon-toed.”

The House of the Binns is a 17th-century laird’s house overlooking the Forth, and home to the Dalyell family for 400 years.

The house was built in 1612 by Thomas Dalyell, an Edinburgh merchant who made his fortune at the court of King James VI and I in London. The Dalyell family gifted the house and surrounding parkland to the NTS in 1944, retaining the right of the family to live there.

The wider property contains archaeological remains pre-dating the establishment of the house and surrounding parkland. Iron Age burials are rare in Scotland, and ones with grave goods even rarer. Just 50 accompanied burials are known.

Mr Rhodes added: “There has always been folklore about Binns Hill being the site of a hill fort. The fact that there is this kind of status burial found at the foot of the hill, there must have been other activity going on in this period. It’s an absolutely perfect spot.”

Author: George Mair | Source: Edinburgh News [March 29, 2015]

The world's rarest ape has an increased chance of survival after a team led by international conservation charity the Zoological Society of London (ZSL) found a new family group of Hainan gibbons (Nomascus hainanus).

Until last month, it was thought that there were just 25 Hainan gibbons living in three social groups on an island off the Chinese mainland.

The discovery of a new fourth group, a mating pair with a young baby, sighted within Bawangling National Nature Reserve, Hainan Province, increases the known population by almost 12%.

The discovery of this fourth breeding group increases reproductive potential of the population, which could be vital for the long term survival of the Critically Endangered gibbons.

ZSL researcher Dr Jessica Bryant, who led the expedition that made the discovery, said: "Finding a new Hainan gibbon group is a fantastic boost for the population. We had hoped to locate at least one or two solitary gibbons, but discovering a whole new family group complete with a baby is beyond our wildest dreams."

The new social group brings the estimate of the total population of Hainan gibbons to around 28 individuals.

The ZSL-led project team, including international gibbon experts along with staff from Bawangling National Nature Reserve Management Office, set out to try and find any surviving lone gibbons in the reserve to gain a greater understanding of the total number of Hainan gibbons that remain.

Gibbons are typically located by the sound of their daily song. Due to the low population density of the Hainan gibbon, they are less likely to sing as there are few other gibbons to advertise their territory to, making detection of solitary individuals or groups extremely challenging. By utilising new acoustic techniques that prompt gibbons to investigate and call, the team were able to locate this new group.

Dr Bryant added: "The success of our discovery is really encouraging. We now want to learn more about this new group, and also hope to extend the investigation to perhaps even find additional solitary gibbons or other groups. Today is a great day for Hainan gibbon conservation."

Source: Zoological Society of London [July 13, 2015]

The Australian Age of Dinosaurs Museum today announced the naming of Savannasaurus elliottorum, a new genus and species of dinosaur from western Queensland, Australia. The bones come from the Winton Formation, a geological deposit approximately 95 million years old.

Savannasaurus was discovered by David Elliott, co-founder of the Australian Age of Dinosaurs Museum, while mustering sheep in early 2005. As Elliott recalled yesterday, "I was nearly home with the mob -- only about a kilometre from the yards -- when I spotted a small pile of fossil bone fragments on the ground. I was particularly excited at the time as there were two pieces of a relatively small limb bone and I was hoping it might be a meat-eating theropod dinosaur." Mr Elliott returned to the site later that day to collect the bone fragments with his wife Judy, who 'clicked' two pieces together to reveal a complete toe bone from a plant-eating sauropod. The Elliotts marked the site and made arrangements to hold a dig later that year.

The site was excavated in September 2005 by a joint Australian Age of Dinosaurs (AAOD) Museum and Queensland Museum team and 17 pallets of bones encased in rock were recovered. After almost ten years of painstaking work by staff and volunteers at the AAOD Museum, the hard siltstone concretion around the bones was finally removed to reveal one of the most complete sauropod dinosaur skeletons ever found in Australia. More excitingly, it belonged to a completely new type of dinosaur.

The new discovery was nicknamed Wade in honour of prominent Australian palaeontologist Dr Mary Wade. "Mary was a very close friend of ours and she passed away while we were digging at the site," said Mr Elliott. "We couldn't think of a better way to honour her than to name the new dinosaur after her."

"Before today we have only been able to refer to this dinosaur by its nickname," said Dr Stephen Poropat, Research Associate at the AAOD Museum and lead author of the study. "Now that our study is published we can refer to Wade by its formal name, Savannasaurus elliottorum," Dr Poropat said. "The name references the savannah country of western Queensland in which it was found, and honours the Elliott family for their ongoing commitment to Australian palaeontology."

In the same publication, Dr Poropat and colleagues announced the first sauropod skull ever found in Australia. This skull, and the partial skeleton with which it was associated, has been assigned to Diamantinasaurus matildae -- a sauropod dinosaur named in 2009 on the basis of its nickname Matilda. "This new Diamantinasaurus specimen has helped to fill several gaps in our knowledge of this dinosaur's skeletal anatomy," said Poropat. "The braincase in particular has allowed us to refine Diamantinasaurus' position on the sauropod family tree."

Dr Poropat collaborated with British sauropod experts Dr Philip Mannion (Imperial College, London) and Professor Paul Upchurch (University College, London), among others, to work out the position of Savannasaurus (and refine that of Diamantinasaurus) on the sauropod family tree. "Both Savannasaurus and Diamantinasaurus belong to a group of sauropods called titanosaurs. This group of sauropods includes the largest land-living animals of all time," said Dr Mannion. "Savannasaurus and the new Diamantinasaurus specimen have helped us to demonstrate that titanosaurs were living worldwide by 100 million years ago."

Poropat and his colleagues suggest that the arrangement of the continents, and the global climate during the middle part of the Cretaceous Period, enabled titanosaurs to spread worldwide.

"Australia and South America were connected to Antarctica throughout much of the Cretaceous," said Professor Upchurch. "Ninety-five million years ago, at the time that Savannasaurus was alive, global average temperatures were warmer than they are today. However, it was quite cool at the poles at certain times, which seems to have restricted the movement of sauropods at polar latitudes. We suspect that the ancestor of Savannasaurus was from South America, but that it could not and did not enter Australia until approximately 105 million years ago. At this time global average temperatures increased allowing sauropods to traverse landmasses at polar latitudes."

Savannasaurus was a medium-sized titanosaur, approximately half the length of a basketball court, with a long neck and a relatively short tail. "With hips at least one metre wide and a huge barrel-like ribcage, Savannasaurus is the most rotund sauropod we have found so far -- even more so than the somewhat hippopotamus-like Diamantinasaurus," said Dr Poropat. "It lived alongside at least two other types of sauropod (Diamantinasaurus and Wintonotitan), as well as other dinosaurs including ornithopods, armoured ankylosaurs, and the carnivorous theropod Australovenator."

Mr Elliott is relieved that Wade can now join "Matilda" and the other new dinosaur species on display in the Museum's Holotype Room. "That this dinosaur specimen can now be displayed for our visitors is a testament to the efforts of numerous volunteers who have worked at the Museum on the fossils over the past decade," he said. Mr Elliott and Dr Poropat agree that the naming of Savannasaurus, the fourth new species published by the AAOD Museum, is just the tip of the iceberg with respect to the potential for new dinosaur species in western Queensland.

"The Australian Age of Dinosaurs Museum has a massive collection of dinosaur fossils awaiting preparation and the number of specimens collected is easily outpacing the number being prepared by volunteers and staff in our Laboratory," Mr Elliott said. "The Museum already has the world's largest collection of bones from Australia's biggest dinosaurs and there is enough new material to keep us working for several decades."

The paper naming the new dinosaur was published in >Scientific Reports.

Source: Australian Age of Dinosaurs Museum of Natural History [October 20, 2016]

"Heartbreaking" graffiti uncovered in a Cambridgeshire church has revealed how three sisters from one family died in a plague outbreak in 1515.

The names Cateryn, Jane and Amee Maddyngley and the date were inscribed on stonework in Kingston parish church.

It was found by Norfolk and Suffolk Medieval Graffiti Survey volunteers.

Archaeologist Matt Champion said the project had shown church plague graffiti was "far more common than previously realised".

"The most heartbreaking inscriptions are those that refer to long-dead children," he said.

The Maddyngley graffiti is hidden under limewash near the door in All Saints' and St Andrew's church.

The family lived in Kingston, seven miles from Cambridge, and were tenant farmers who "rarely turn up in parish records", he said.

Mr Champion believes Cateryn, Jane and Amee must have been children because their names are not found as adults in any of the records.

In 1515, there was an outbreak of bubonic plague in London which spread across south east England.

Mr Champion said Cambridge University suspended its classes and large gatherings of people were banned, "just as we see today with the Ebola outbreaks in Africa".

Children were particularly hard-hit and usually hastily buried in unmarked graves.

The graffiti survey was set up in 2010 and is the first attempt to survey pre-Reformation graffiti in churches since the late 1960s.

Volunteers use digital cameras and powerful lamps to reveal previously hidden or faded markings.

At least 60% of the 650 churches surveyed in Norfolk, Suffolk and north Essex have "significant amounts" of graffiti and volunteers have recorded up to 500 pieces in many of them.

The project has confirmed more graffiti is found to have been created during times of pestilence such as the Black Death of 1349 and subsequent outbreaks of plagues.

"It was a votive offering at a time where prayer counted," Mr Champion said.

Source: BBC News Website [February 21, 2015]

An international research partnership is revealing the first mosasaur fossil of its kind to be discovered in Japan. Not only does the 72-million-year-old marine reptile fossil fill a biogeographical gap between the Middle East and the eastern Pacific, but also it holds new revelations because of its superior preservation. This unique swimming lizard, now believed to have hunted on glowing fish and squids at night, is detailed in an article led by Takuya Konishi, a University of Cincinnati assistant professor of biological sciences. The article is published in the Journal of Systematic Palaeontology, a publication of the Natural History Museum in London.

The fossil marine reptile, Phosphorosaurus ponpetelegans (a phosphorus lizard from an elegant creek), existed during the Late Cretaceous Period just before the last of the dinosaurs such as Tyrannosaurus and Triceratops. Compared with some of their mosasaur cousins that could grow as large as 40 feet, this species is relatively small, about 3 meters, or 10 feet long. This unique discovery in a creek in the town of Mukawa in northern Japan reveals that they were able to colonize throughout the northern hemisphere.

"Previous discoveries of this particular rare mosasaur have occurred along the East Coast of North America, the Pacific Coast of North America, Europe and North Africa, but this is the first to fill the gap between the Middle East and the Eastern Pacific," explains Konishi, a member of the research team that also was represented by the Royal Tyrrell Museum of Palaeontology (Canada), University of Alberta, Brandon University, Hobetsu Museum (Japan), Fukuoka University and the town of Mukawa.

Because the fossil was so well preserved, the creature revealed it had binocular vision -- its eyes were on the front of the face, providing depth perception. This was a new discovery for this fossil species. The discovery reveals that the eye structure of these smaller mosasaurs was different from their larger cousins, whose eyes were on either side of their large heads, such as the eye structure of a horse. The eyes and heads of the larger mosasaurs were shaped to enhance streamlined swimming after prey that included fish, turtles and even small mosasaurs.

"The forward-facing eyes on Phosphorosaurus provide depth perception to vision, and it's common in birds of prey and other predatory mammals that dwell among us today," says Konishi. "But we knew already that most mosasaurs were pursuit predators based on what we know they preyed upon -- swimming animals. Paradoxically, these small mosasaurs like Phosphorosaurus were not as adept swimmers as their larger contemporaries because their flippers and tailfins weren't as well developed."

As a result, Konishi says it's believed these smaller marine reptiles hunted at night, much like the owl does compared with the daytime birds of prey such as eagles. The binocular vision in nocturnal animals doubles the number of photoreceptors to detect light. And, much like owls with their very large eyes to power those light receptors, the smaller mosasaur revealed very large eye sockets.

Also, because fossils of lantern fish and squid-like animals have been found from the Late Cretaceous Period in northern Japan, and because their modern counterparts are bioluminescent, the researchers believe that Phosphorosaurus may have specifically targeted those glowing fish and squids at night while their larger underwater cousins hunted in daytime.

"If this new mosasaur was a sit-and-wait hunter in the darkness of the sea and able to detect the light of these other animals, that would have been the perfect niche to coexist with the more established mosasaurs," says Konishi.

Painstaking Preservation

The fossil, enclosed in a rock matrix, was first discovered in 2009, in a small creek in northern Japan. Revealing what was inside the matrix while protecting the fossil was a painstaking process that took place at the Hobetsu Museum in Mukawa. The calcareous nodule would be dipped at night in a special acid wash, and then carefully rinsed the next day, as the two-year process freed the bones from the matrix. To further protect the fossil, special casts were made of the bones so that the researchers could piece together the remains without damaging the fossil.

"It's so unusually well-preserved that, upon separating jumbled skull bones from one another, we were able to build a perfect skull with the exception of the anterior third of the snout," says Konishi. "This is not a virtual reality reconstruction using computer software. It's a physical reconstruction that came back to life to show astounding detail and beautiful, undistorted condition."

Future Research

Konishi says future research will examine how this new mosasaur fits in the evolutionary family tree of mosasaurs.

Author: Dawn Fuller | Source: University of Cincinnati [December 08, 2015]

How an Aberdonian would have looked around 750 years ago is to be reconstructed by one of the world’s top forensic anthropologists.

Professor Sue Black, director of the Centre for Anatomy and Human Identification at Dundee University, is in talks with city chiefs on the project after a mass haul of medieval skeletons was made in the city centre earlier this year.

Professor Black described it as a “fascinating project” and is due to create a 3D map to give an impression of how the city forebearers may have looked.

If the condition of the remains found underneath Aberdeen Art Gallery is good enough, a whole family could be reconstructed.

A bronze cast of the impressions could become the centrepiece to Aberdeen’s new art gallery complex, due to open in 2017.

Aberdeen City Council Leader, Councillor Jenny Laing, said the prospect of working with Professor Black elevated the gallery project to a new level.

She said: “Sue Black is the world’s leading forensic anthropologist and to have her engaged in this project elevates our work to a new level and opens the door to new possibilities.”

“These people pre-date Robert the Bruce and were alive when Henry III was on the English throne – it is fascinating to think that we could get a glimpse into their world and to consider how Aberdeen has changed through the centuries. The analysis that is being done will provide a unique insight into the people that have lived right here in Aberdeen centuries ago.

“It is all the more special to think that they are our forefathers.”

In March, 92 skeletons believed to date back to the 13th Century were unearthed from under Aberdeen Art Gallery during the £30 million redevelopment works.

It is likely that the discovery of the skeletons was linked to Blackfriars, a church and friary dating to around 1230 that was destroyed during the Reformation. Archaeologists found a collection of bones of at least 40 people in three coffins and a further 52 skeletons were found in individual coffins in their own graves.

Artefacts and treasures such as coins, coffin fixtures and textile ceramics were also found and are currently being analysed in London along with the skeletons.

Details on disease, war or famine in that time period are now being searched for.

Author: Alison Campsie | Source: The Scotsman [May 25, 2016]

Uplift associated with the Great Rift Valley of East Africa and the environmental changes it produced have puzzled scientists for decades because the timing and starting elevation have been poorly constrained.

Now paleontologists have tapped a fossil from the most precisely dated beaked whale in the world -- and the only stranded whale ever found so far inland on the African continent -- to pinpoint for the first time a date when East Africa's mysterious elevation began.

The 17 million-year-old fossil is from the beaked Ziphiidae whale family. It was discovered 740 kilometers inland at an elevation of 620 meters in modern Kenya's harsh desert region, said vertebrate paleontologist Louis L. Jacobs, Southern Methodist University, Dallas.

At the time the whale was alive, it would have been swimming far inland up a river with a low gradient ranging from 24 to 37 meters over more than 600 to 900 kilometers, said Jacobs, a co-author of the study.

The study, published in the Proceedings of the National Academy of Sciences, provides the first constraint on the start of uplift of East African terrain from near sea level.

"The whale was stranded up river at a time when east Africa was at sea level and was covered with forest and jungle," Jacobs said. "As that part of the continent rose up, that caused the climate to become drier and drier. So over millions of years, forest gave way to grasslands. Primates evolved to adapt to grasslands and dry country. And that's when -- in human evolution -- the primates started to walk upright."

Identified as a Turkana ziphiid, the whale would have lived in the open ocean, like its modern beaked cousins. Ziphiids, still one of the ocean's top predators, are the deepest diving air-breathing mammals alive, plunging to nearly 10,000 feet to feed, primarily on squid.

In contrast to most whale fossils, which have been discovered in marine rocks, Kenya's beached whale was found in river deposits, known as fluvial sediments, said Jacobs, a professor in the Roy M. Huffington Department of Earth Sciences of SMU's Dedman College of Humanities and Sciences. The ancient large Anza River flowed in a southeastward direction to the Indian Ocean. The whale, probably disoriented, swam into the river and could not change its course, continuing well inland.

"You don't usually find whales so far inland," Jacobs said. "Many of the known beaked whale fossils are dredged by fishermen from the bottom of the sea."

Determining ancient land elevation is very difficult, but the whale provides one near sea level.

"It's rare to get a paleo-elevation," Jacobs said, noting only one other in East Africa, determined from a lava flow.

Beaked whale fossil surfaced after going missing for more than 30 years

The beaked whale fossil was discovered in 1964 by J.G. Mead in what is now the Turkana region of northwest Kenya.

Mead, an undergraduate student at Yale University at the time, made a career at the Smithsonian Institution, from which he recently retired. Over the years, the Kenya whale fossil went missing in storage. Jacobs, who was at one time head of the Division of Paleontology for the National Museums of Kenya, spent 30 years trying to locate the fossil. His effort paid off in 2011, when he rediscovered it at Harvard University and returned it to the National Museums of Kenya.

The fossil is only a small portion of the whale, which Mead originally estimated was 7 meters long during its life. Mead unearthed the beak portion of the skull, 2.6 feet long and 1.8 feet wide, specifically the maxillae and premaxillae, the bones that form the upper jaw and palate.

The researchers reported their findings in "A 17 million-year-old whale constrains onset of uplift and climate change in East Africa" online at the PNAS web site.

Modern cases of stranded whales have been recorded in the Thames River in London, swimming up a gradient of 2 meters over 70 kilometers; the Columbia River in Washington state, a gradient of 6 meters over 161 kilometers; the Sacramento River in California, a gradient of 4 meters over 133 kilometers; and the Amazon River in Brazil, a gradient of 1 meter over 1,000 kilometers.

Source: Southern Methodist University [March 17, 2015]

Some 80 km southeast of Cairo is the small village of Karanis, once one of the largest Graeco-Roman towns in Fayoum. It was established in antiquity by Ptolemy II Philadelphus, as part of a scheme to settle Greek mercenaries among indigenous Egyptians and exploit the fertile Fayoum basin.

Karanis flourished until the end of the 3rd century CE, when the town started to decline due to troubles in the wider Roman Empire. The town was abandoned by the beginning of the 5th century, as part of momentous socioeconomic, political and religious changes taking place throughout the Mediterranean region.

The site was forgotten, buried by the sands, until the early 19th century when farmers unearthed papyri among organic debris left by the ancient inhabitants. It is these papyri, suitably conserved and restored, that have now been put on display at the Egyptian Museum.

Archaeological excavation, led by British Egyptologist Bernard Pyne Grenfell and papyrologist Arthur Surridge Hunt, started in Karanis in 1895. However, they did not continue their work, deciding that the site had been too plundered in antiquity to produce anything of value. The few papyri and artefacts they stumbled upon were not considered important enough to lead to a better understanding of the history of the site during the Graeco-Roman period.

In 1924 the archaeological rescue of the site began, continuing for the next 12 years under the leadership of an American mission from Michigan University directed by Francis W Kelsey. Two temples, residential houses and urban districts were discovered, along with cisterns, public baths and a collection of household objects of different shapes, sizes and materials. A large collection of papyri, now exhibited at the Kelsey Museum in Michigan in the US, was also unearthed.

The papyri are historically significant as they provide an idea of the lives led by the town’s inhabitants in ancient times, as well as of Egypt’s relationship with the Roman Empire. The papyri were written at the same time and unearthed from the same place, all of them written in Greek and dating to the period between the reign of the emperor Diocletian and the 370s CE.

“It is the dry climate of Karanis which preserved these papyri,” said German papyrologist Cornelia Römer, who noted that although the papyri had been taken to Michigan the university had given part of the collection back to Egypt in 1952. This part was then put in storage at the Egyptian Museum and had not been closely studied.

In 2010, Römer came to Egypt for excavation work in Fayoum, in an area called Filoteris, five km from Lake Qarun. She hoped to investigate drainage systems used in Fayoum during the Graeco-Roman period. But due to her interest in papyri and her desire to promote papyrology in Egypt, Römer started to study the Karanis papyri, often known as the Michigan papyri.

In collaboration with young restorers at the Egyptian Museum, Römer started conservation work on the papyri, which are of different sizes and in different conditions of conservation. Some of them are tiny fragments in a poor state of conservation, while others are larger and in a much better condition.

Romer then published the results of her work in collaboration with professors from Alexandria University and Cairo and Ain Shams Universities in Egypt.

“When I came face to face with the papyri, I was very excited as I could not have expected what I would find,” Römer told the Weekly. Her work concentrated on a group of papyri found in the house of a man called Socrates who lived in the 2nd century CE. He was a tax collector who went door to door to collect money from people for the Roman state.

“We knew his profession from papyri found inside his house, which include long lists of names and numbers,” Römer said, adding that he kept a register of who had paid what in the village. Studies of these lists revealed that people had to pay taxes for baths and guards, among other things. Tax rates were the same for everybody and did not depend on income.

The papyri show that Socrates was a rich man who gained a lot from his profession. In Roman times, Römer said, a tax collector typically took more than he needed to remit to the state. “Obviously, he was a clever and rich man in the village,” Römer said, adding that he lived in a large house located in the best area, was married, and had two sons and a daughter.

“From the names of Socrates’s family and the names written in the tax lists, we also know that ancient Karanis was a multicultural society,” Römer said. While Socrates bore a Greek name, his wife and two sons had Roman names, while his daughter had an Egyptian name and her husband had a Roman name. The names written on the lists are in Latin, Greek and Egyptian.

Römer said that when Alexander the Great conquered Egypt in 332 BCE Egypt became part of the Hellenistic world. His former general, Ptolemy, established a Greek-speaking dynasty in the country that then ruled it for the next 300 years. Even after the beginning of Roman rule in 1st century BCE, tens of thousands of Greek-speaking people lived in Egypt, working in the army and administration of the country.

The Ptolemies created new settlements for the newcomers, including in Fayoum, a depression centred on Lake Qarun south of Cairo. A sophisticated system of canals and dams was built to lower the level of the lake. “Thousands of new fields were created and Fayoum was declared a new settlement to host the new settlers,” Römer said, adding that the town of Karanis was among these new settlements.

Study of the papyri show that the number of inhabitants in Karanis reached 1,500 people, two thirds of whom were Egyptians and one third Greek. In the 2nd century CE, when Socrates lived, the population reached nearly 4,000 people.

Along with tax records, Römer said that literary papyri had also been found. It seems that in order to fit into society in Karanis, Socrates thought it important to hone his Greek culture and read classical Greek literature.

“We found papyri of poems written by the Greek poet Homer and Greek plays written by the dramatist Menander who lived in 300 BCE,” Römer said. She added that this highlights the fact that people continued to read Menander’s comedies 450 years after they were written. Ancient Greek comedy “always has a happy ending,” Römer said. As well, fragments of a play called “A Man on Trial” were found.

She continued to say that among the papyri at the Egyptian Museum is a love letter written by an unidentified woman, as well as notifications of death and complaints about robberies. Among the latter was one presented by a man who was attacked and beaten on the road, and another by a farmer who lost some of his harvest to thieves.

“Studying these papyri has taken us deep into the daily life of this society,” Römer said. It has even been possible to identify the type of clothes people wore. One text complaining of a robbery said that a man broke into the author’s house and stole boxes of clothes, she said.

“Living standards in Karanis were lower than in Alexandria, the capital of Egypt at the time, but the inhabitants tried to imitate the life of the capital nonetheless,” Römer said.

The Greek comedy that Socrates had been reading was to the taste of people living in rural areas, whereas in Alexandria, tragedies considered too difficult for people in the provinces would have been read. “However, the existence of such literary texts indicates that residents were keen to show themselves to be well educated in Greek,” she added.

A medical handbook from the first century CE showing surgical techniques was also found. Part of it shows a dislocated shoulder and the recommended treatment to fix it. “This piece is a section of a papyrus roll and the other part is in the British Museum in London,” Römer told the Weekly.

The papyri will now be on display for three weeks in the temporary exhibition hall at the Egyptian Museum. The display includes information about Socrates and his family, his library and the excavation work carried out.

Clay and bronze statues depicting Greek and ancient Egyptian deities found in the houses of the town’s inhabitants are also on show, along with glass vessels of different shapes and sizes.

“I am very happy with the results of the collaboration with Egyptian restorers, and I aim to continue studying the rest of the Karanis papyri,” Römer said.

Author: Nevine El-Aref | Source: Al Ahram Weekly [February 12, 2015]

The reunification of ancient Egypt achieved by Nebhepetre Mentuhotep II—the first pharaoh of the Middle Kingdom—was followed by a great cultural flowering that lasted nearly 400 years. During the Middle Kingdom (mid-Dynasty 11–Dynasty 13, around 2030–1650 B.C.), artistic, cultural, religious, and political traditions first conceived and instituted during the Old Kingdom were revived and reimagined.

This transformational era will be represented through 230 powerful and compelling masterworks (individual objects and groups of objects) in the major international exhibition Ancient Egypt Transformed: The Middle Kingdom, opening October 12 at New York’s Metropolitan Museum of Art. Fashioned with great subtlety and sensitivity, and ranging in size from monumental stone sculptures to delicate examples of jewelry, the works of art are drawn from the preeminent collection of the Metropolitan—which is particularly rich in Middle Kingdom material—and 37 museums and collections in North America and Europe. This is the first comprehensive presentation of Middle Kingdom art and culture and features many objects that have never been shown in the United States.

“The astonishing continuity of ancient Egyptian culture, with certain basic principles lasting for thousands of years, gives the impression of changelessness,” said Adela Oppenheim, Curator of Egyptian Art. “But the works of art in the exhibition will show that ancient Egypt constantly evolved, and was remarkably flexible within a consistent framework. New ideas did not simply replace earlier notions; they were added to what had come before, creating a fascinating society of ever-increasing complexity.”

Arranged thematically and chronologically, the exhibition opens with a forceful, monumental statue of King Mentuhotep II, carved in an intentionally archaic style that suggests a link to the legendary kings of early Egypt (ca. 3300 B.C.).

Profound changes in the concept of kingship are demonstrated through a series of royal statues that span several hundred years. Early Middle Kingdom pharaohs are often depicted with youthful faces and confident expressions. In contrast, the evocative, fleshy faces and deep-set, hooded eyes of later kings present startling images of maturity and humanity.

During the 12th Dynasty, the construction of pyramid complexes resumes, after a lapse of more than a century. The innovation found in these complexes is exemplified by that of Senwosret III (around 1878-1840 B.C.) at Dahshur, site of Metropolitan Museum excavations since 1990. A detailed 1-to-150 scale model made by Ron Street, Supervisor of the Museum’s Three-Dimensional Imaging, Prototyping, and Molding Studio, will show the original form of the complex.

Royal women were always closely connected to the pharaoh, as evidenced by the placement of their burials and chapels near those of the king. Although less is known about Middle Kingdom queens and princesses, indicating altered or perhaps diminished roles during the era, some of the finest ancient Egyptian jewelry was produced for elite women of the time. Inscriptions and symbolic motifs endowed the jewelry with spiritual power and related to the role these women played in supporting the kings as guarantors of divine order on earth.

During the Middle Kingdom, members of all levels of Egyptian society commissioned a wider variety of works of art and constructed commemorative chapels at significant holy sites; statues of squatting figures rendered in a cubic, block-like form and statues in an attitude of prayer originate during this period.

Thematic groupings of artifacts from domestic settings, tombs, and temples reveal the breadth of artistic expression, evolution of styles, and the transformation of many aspects of Egyptian culture and religion. First attested in the Middle Kingdom are a variety of intriguing, protective magical objects, notably some that were believed to shield pregnant women and young children. Among them are curved hippopotamus tusks that are unique to this era and are covered with images of beneficial supernatural beings.

The family was always a central element of ancient Egyptian culture, but in the Middle Kingdom larger groups of relatives are depicted together on stelae and sculptures. One remarkable stela on view features depictions of 30 individuals. Others include poignant groupings of mothers and their young children.

Significant changes in afterlife beliefs during the Middle Kingdom are manifest in new kinds of objects present in burials. Intricately and finely rendered miniatures of painted wood (so-called models) from the tomb of the chancellor Meketre (ca. 1980–75 B.C.), excavated by the Metropolitan in 1920, depict food production, manufacturing, and journeys by boat; they are displayed in several sections of the exhibition.

During the Middle Kingdom, the god Osiris gained importance as a funerary deity and, from then on, the dead at all levels of society became manifestations of the god. Because Osiris functioned as the ruler of the underworld, certain symbols and regalia that had been the sole prerogative of the reigning king were appropriated for non-royal use: mummies sometimes had a uraeus on the brow (a stylized cobra usually seen on a pharaoh’s crown), and a flail (a standard attribute of the pharaoh) could be placed inside a coffin. Canopic jars, which held the organs of the deceased, became much more ornate in the Middle Kingdom. With lids in the form of human heads, the vessels are small sculptures in their own right.

As devotion to Osiris increased, his cult center at Abydos (north of Luxor) gained prominence. Annual processions were held between his temple and his supposed burial place in the desert to the west. To participate eternally in these elaborate rites and ensure their afterlife, individuals at many levels of society erected memorial chapels—some with outstanding artworks—for themselves and their families along the procession route.

Deity temples—largely built of fragile mud brick in the Old Kingdom—were transformed dramatically during the Middle Kingdom, when pharaohs commissioned decorated stone temples throughout the country. Decoration included spectacular sculpture and reliefs depicting the pharaoh presenting offerings to and revering deities, as well as statues of the gods.

Colossal statues were first made during the Old Kingdom, but they became much more common during the Middle Kingdom. Portions of colossal statues will be displayed throughout the exhibition, with the largest in scale being presented at its conclusion: a monumental head of pharaoh Amenemhat III that was transported to the Delta city of Bubastis and reused by later kings. The same happened to the colossal statue of a mid-Dynasty 12 king, on loan from the Ägyptisches Museum und Papyrussammlung, Berlin, and on view in the Museum’s Great Hall. Pharaohs after the Middle Kingdom reused the monuments of their predecessors, particularly those of the Middle Kingdom, both for economy and to link themselves to the past.

General knowledge of the history of the Middle Kingdom—the achievements of its artists, its religious beliefs, burial customs, and relationships with other lands—stems in large part from Metropolitan Museum sponsorship of numerous excavations at Middle Kingdom sites including Deir el-Bahri (1920–31), Lisht (1906–34, 1984–91), and Dahshur (1990–present).

Source: The Metropolitan Museum of Art [September 26, 2015]

Consider the engineering marvel that is your foot. Be it hairy or homely, without its solid support you'd be hard-pressed to walk or jump normally.

Now, researchers at the Stanford University School of Medicine and the HudsonAlpha Institute for Biotechnology in Huntsville, Alabama, have identified a change in gene expression between humans and primates that may have helped give us this edge when it comes to walking upright. And they did it by studying a tiny fish called the threespine stickleback that has evolved radically different skeletal structures to match environments around the world.

"It's somewhat unusual to have a research project that spans from fish all the way to humans, but it's clear that tweaking the expression levels of molecules called bone morphogenetic proteins can result in significant changes not just in the skeletal armor of the stickleback, but also in the hind-limb development of humans and primates," said David Kingsley, PhD, professor of developmental biology at Stanford. "This change is likely part of the reason why we've evolved from having a grasping hind foot like a chimp to a weight-bearing structure that allows us to walk on two legs."

Kingsley, who is also a Howard Hughes Medical Institute investigator, is the senior author of a paper describing the work that will be >published in Cell. The lead author is former Stanford postdoctoral scholar Vahan Indjeian, PhD, now head of a research group at Imperial College London.

Adapting to different environments

The threespine stickleback is remarkable in that it has evolved to have many different body structures to equip it for life in different parts of the world. It sports an exterior of bony plates and spines that act as armor to protect it from predators. In marine environments, the plates are large and thick; in freshwater, the fish have evolved to have smaller, lighter-weight plates, perhaps to enhance buoyancy, increase body flexibility and better slip out of the grasp of large, hungry insects. Kingsley and his colleagues wanted to identify the regions of the fish's genome responsible for the skeletal differences that have evolved in natural populations.

The researchers identified the area of the genome responsible for controlling armor plate size, and then looked for differences there in 11 pairs of marine and freshwater fish with varying armor-plate sizes. They homed in on a region that includes the gene for a bone morphogenetic protein family member called GDF6. Due to changes in the regulatory DNA sequence near this gene, freshwater sticklebacks express higher levels of GDF6, while their saltwater cousins express less. Strikingly, marine fish genetically engineered to contain the regulatory sequence of freshwater fish expressed higher levels of GDF6 and developed smaller armor plates, the researchers found.

Regulatory regions in humans vs. chimps

Kingsley and his colleagues wondered whether changes in GDF6 expression levels might also have contributed to critical skeletal modifications during human evolution. The possibility was not as far-fetched as it might seem. Other studies by evolutionary biologists, including Kingsley, have shown that small changes in the regulatory regions of key developmental genes can have profound effects in many vertebrates.

They began by working with colleagues in the laboratory of Gill Bejerano, PhD, Stanford associate professor of developmental biology, of computer science and of pediatrics, to compare differences in the genomes of chimps and humans. In previous surveys, they found over 500 places in which humans have lost regulatory regions that are conserved from chimps and many other mammals. Two of these occur near the GDF6 gene. They homed in on one in particular.

"This regulatory information was shared through about 100 million years of evolution," said Kingsley. "And yet, surprisingly, this region is missing in humans."

To learn more about what the GDF6 regulatory region might be controlling, the researchers used the chimp regulatory DNA to control the production of a protein that is easy to visualize in mice. Laboratory mice with the chimp regulatory DNA coupled to the reporter protein strongly and specifically expressed the protein in their hind limbs, but not their forelimbs, and in their lateral toes, but not the big toes of the hind limbs. Mice genetically engineered to lack the ability to produce GDF6 in any part of their bodies had skull bones that were smaller than normal and their toes were shorter than those of their peers. Together, these findings gave the researchers a clue that GDF6 might play a critical role in limb development and evolution.

The big toe: an explanation

The fact that humans are missing the hind-limb-regulatory region probably means that we express less of the gene in our legs and feet during development, but comparable amounts in our nascent arms, hands and skulls. Loss of this particular regulatory sequence would also shorten lateral toes but not the first toe of feet. This may help explain why the big toe is aligned with other short, lateral toes in humans. Such a modification would create a more sturdy foot with which to walk upright.

"These bone morphogenetic proteins are strong signals for bone and cartilage growth in all types of animals," said Kingsley.

"You can evolve new skeletal structures by changing where and when the signals are expressed, and it's very satisfying to see similar regulatory principles in action whether you are changing the armor of a stickleback, or changing specific hind-limb structures during human evolution."

Author: Krista Conger | Source: Stanford University Medical Center [January 07, 2016]

When members of the BaYaka Pygmies living in the northern Republic of Congo get sick, they don't just go to the doctor for a prescription. Instead, they rely on their shared knowledge of medicinal plants to help them get well. Now, researchers reporting in the Cell Press >journal Current Biology on September 8 have examined shared uses of those plants to understand how Pygmies have passed their extensive plant knowledge along from one person to the next.

The findings show the important role of marital bonds in passing information to otherwise distant families. There were some surprises, too.

"I wasn't expecting that plant uses would be so diverse," says Gul Deniz Salali (@DenizSalali) of University College London. She hadn't expected to find that plants would play an important role in executing social norms, either. "But many Pygmies told me that they used particular plants to detect and punish cheaters."

Salali was interested in exploring how hunter-gatherers accumulated the vast repertoire of plant uses that have helped them to survive in tropical rainforests. To find out, she and her colleagues examined the reported co-occurrence of plant uses between pairs of BaYaka Pygmy individuals based on extensively conducted interviews. Their study included reported uses of 33 different plants by 219 individuals living in four camps.

"We found that long-term pair bonds between men and women allowed otherwise distant families to combine information on medicinal uses of plants," Salali says. "Living in multi-family camps, on the other hand, enabled Pygmies to exchange and accumulate plant knowledge related to cooperative foraging and social beliefs."

The most commonly reported medicinal uses of plants were for treating digestive and respiratory disorders. The BaYaka also use some plants for collecting caterpillars or honey and as a poison for killing monkeys or fish. Other plants were used to regulate social life, including matters concerning lying or sexual taboos.

As an example, Salali says, some Pygmies use the juice extracted from a particular type of tree bark to detect and punish cheaters. "If someone cheated their partner, camp members would squeeze the poisonous juice into the person's eyes which could affect his or her vision. If his or her vision was affected, then people thought the person was guilty. I found that the knowledge on this type of plant use was widely shared among the campmates."

Knowledge of medicinal plants is mainly shared between spouses and other relatives, they found. But plant uses associated with foraging and social norms were often shared more widely among campmates, regardless of relatedness, playing an important role in camp-wide activities that require cooperation.

The researchers also found that BaYaka mothers who used more plants for treating certain diseases had healthier children.

Salali says her next step is to compare plant knowledge and use in hunter-gatherers living in varying proximity to market towns in Congo. "I have lived in some Pygmy camps that were located in the forest, and some larger ones that were located in a logging town," she says. "I am interested in exploring the biological and cultural adaptations of groups in transition from a nomadic hunter-gatherer lifestyle to a more sedentary farming way of life."

Source: Cell Press [September 08, 2016]

Bodies found in a 200 year-old Hungarian crypt have revealed the secrets of how tuberculosis (TB) took hold in 18th century Europe, according to a research team led by the University of Warwick.

A new study published in Nature Communications details how samples taken from naturally mummified bodies found in an 18th century crypt in the Dominican church of Vác in Hungary have yielded 14 tuberculosis genomes, suggesting that mixed infections were common when TB was at peak prevalence in Europe.

The research team included collaborators from the Universities of Warwick and Birmingham, University College London, the Hebrew University in Jerusalem and the Hungarian Natural History Museum in Budapest. Lead author Professor Mark Pallen, from Warwick Medical School, said the discovery was significant for current and future infection control and diagnosis.

Professor Pallen said: “Microbiological analyses of samples from contemporary TB patients usually report a single strain of tuberculosis per patient. By contrast, five of the eight bodies in our study yielded more than one type of tuberculosis – remarkably from one individual we obtained evidence of three distinct strains.”

The team used a technique called “metagenomics” to identify TB DNA in the historical specimens—that is direct sequencing of DNA from samples without growing bacteria or deliberately fishing out TB DNA. This approach draws on the remarkable throughput and ease of use of modern DNA sequencing technologies.

Gemma Kay, first author on the paper says: “Poignantly, we found evidence of an intimate link between strains from in a middle-aged mother and her grown-up daughter, suggesting both family members died from this devastating infection.”

The team used the 18th century sequences to date the origin of the lineage of TB strains commonly found in Europe and America to the late Roman period, which fits in with the recent controversial suggestion that the most recent common ancestor of all TB strains occurred as recently as six thousand years ago.

Professor Pallen said: “By showing that historical strains can be accurately mapped to contemporary lineages, we have ruled out, for early modern Europe, the kind of scenario recently proposed for the Americas—that is wholesale replacement of one major lineage by another—and have confirmed the genotypic continuity of an infection that has ravaged the heart of Europe since prehistoric times.”

Professor Pallen added that with TB resurgent in many parts of the world, the struggle to contain this ancient infection was far from over. He concludes: “We have shown that metagenomic approaches can document past infections. However, we have also recently shown that metagenomics can identify and characterize pathogens in contemporary samples, so such approaches might soon also inform current and future infectious disease diagnosis and control.”

For more photos of the Hungarian mummies visit the website Morbid Anatomy.

Source: University of Warwick [April 07, 2015]

The English Bulldog refers to a short-haired breed of dog (subgroup molosses & mastiffs). The standart refers to the breed of bodyguards and companion dog. The English bulldog was bred in the second half of the 19th century, based on the breed of an old-English bulldog. The English Bulldog has a strong character and is considered the national dog of England.

The English Bulldog, long time was known as aggressive and fearless «dog VS bull», but today it's the just respectable decorative dog. Loyal & intelligent dog, he is perfect as a companion. The Bulldog appreciates a permanent human attention. Dogs of this breed is considered as a dominant, though, tend to behave safely (except castrated males).

The English Bulldogs establish a strong bond with his family. Always faithful to one owner and ready to defend it interests. Good-natured, and, with a quiet mind — he gets along well with other dogs and pets. The English bulldogs are smart, well trainable, but very stubborn and lazy, so — I wish you patience, a potential dog owner. Anyhow, the English bulldog is the great friend and the loyal bodyguard.

Helen, thanks for photos!

Archaeologists from the British museum have reconstructed an ancient man's face, allowing visitors to see what he looked like for the first time.

The man lived 9,500 years ago in the holy city of Jericho, now found in the Palestinian territories near the West Bank.

The 'Jericho skull' was found by British archaeologists in 1953, but until now nobody knew what the he had looked like.

Scientists still don't know the man's true identity, but they speculate that he was once someone of great importance.

This is based on the amount of care people had taken to fill his skull with plaster once he had died, almost 10,000 years ago.

Back then, plastered skulls were a form of ritual burial, like the Egyptians' infamous mummification burials.

The gruesome practice involved removing the corpse's skull and filling it with plaster, before painting over the dead person's face and filling his eye sockets with shells.

These remains were likely put on display for locals while the rest of the body was buried under the family home.

The Jericho skull was found nestled alongside several other plastered skulls, but was by far the most well-preserved of the group.

'He was certainly a mature individual when he died, but we cannot say exactly why his skull, or for that matter the other skulls that were buried alongside him, were chosen to be plastered,' British Museum curator Alexandra Fletcher told >Seeker.

'It may have been something these individuals achieved in life that led to them being remembered after death.'

Before the reconstruction, the ancient skull showed few human features due to the plaster pasting over most of its features.

To investigate the grim burial practice, the scientists sent the skull off for a scan at the Imaging and Analysis Centre at London's Natural History Museum.

Here, a complete micro-CT scan unveiled a ream of new information about the skull, and inspired the Museum to undertake a full plaster reconstruction.

Through the CT scans, the team discovered that the ancient man was missing a jaw underneath the plaster, and had lines of decaying teeth.

They could see he had suffered a broken nose at some point in his life.

He had also undergone head-binding, a traditional practice in which the skull of a human being is deformed intentionally, usually by forcefully distorting a child's skull.

'Head binding is something that many different peoples have undertaken in various forms around the world until very recently,' Fletcher told Seeker.

'In this case, the bindings have made the top and back of the head broader - different from other practices that aim for an elongated shape. I think this was regarded as a 'good look' in Jericho at this time.'

All of the newly gathered details allowed the team to make an accurate plaster reconstruction of the man's head.

And while the fascinating new model provides fresh insight into the man's life, plenty more work needs to be done to discover more about his history and culture.

The team hopes to gather DNA samples from the skull in future, laying out 10,000 year-old genes for investigation.

But the process would be risky - it's likely to damage the skull and useful results aren't guaranteed.

'If we were able to extract DNA from the human remains beneath the plaster, there is currently a very slight chance that we would be able to find out this individual's hair and eye colour,' Fletcher said.

'I say a slight chance because the DNA preservation in such ancient human remains can be too poor to obtain any information.'

The reconstructed face will be on display at the British Museum in London from next Thursday until mid-February.

Author: Harry Pettit | Source: Daily Mail Online [December 09, 2016]

The remains of 16 pyramids with tombs underneath have been discovered in a cemetery near the ancient town of Gematon in Sudan.

They date back around 2,000 years, to a time when a kingdom called "Kush" flourished in Sudan. Pyramid building was popular among the Kushites. They built them until their kingdom collapsed in the fourth century AD.

Derek Welsby, a curator at the British Museum in London, and his team have been excavating at Gematon since 1998, uncovering the 16 pyramids, among many other finds, in that time. "So far, we've excavated six made out of stone and 10 made out of mud brick," Welsby said.

The largest pyramid found at Gematon was 10.6 meters (about 35 feet) long on each side and would have risen around 13 m (43 feet) off the ground.

Wealthy and powerful individuals built some of the pyramids, while people of more modest means built the others, Welsby said. "They're not just the upper-elite burials," he said.

In fact, not all the tombs in the cemetery have pyramids: Some are buried beneath simple rectangular structures called "mastaba," whereas others are topped with piles of rocks called "tumuli." Meanwhile, other tombs have no surviving burial markers at all.

In one tomb, archaeologists discovered an offering table made of tin-bronze. Carved into the tableis a scene showing a prince or priest offering incense and libations to the god Osiris, the ruler of the underworld. Behind Osiris is the goddess Isis, who is also shown pouring libations to Osiris.

Though Osiris and Isis originated in Egypt, they were also venerated in Kush as well as other parts of the ancient world. The offering table "is a royal object," Welsby said. The person buried with this table "must have been someone very senior in the royal family."

Most of the tombs had been robbed, to some degree, in ancient or modern times. The only tomb with a pyramid that survived intact held 100 faience beads (faience is a type of ceramic) and the remains of three infants. The fact that the infants were buried without gold treasures may have dissuaded thieves from robbing the tomb, Welsby said.

The Kushite kingdom controlled a vast amount of territory in Sudan between 800 B.C. and the fourth century A.D. There are a number of reasons why the Kushite kingdom collapsed, Welsby said.

One important reason is that the Kushite rulers lost several sources of revenue. A number of trade routes that had kept the Kushite rulers wealthy bypassed the Nile Valley, and instead went through areas that were not part of Kush. As a result, Kush lost out on the economic benefits, and the Kush rulers lost out on revenue opportunities. Additionally, as the economy of the Roman Empire deteriorated, trade between the Kushites and Romans declined, further draining the Kushite rulers of income.

As the Kushite leaders lost wealth, their ability to rule faded. Gematon was abandoned, and pyramid building throughout Sudan ceased.

Wind-blown sands, which had always been a problem for those living at Gematon, covered both the town and its nearby pyramids.

Author: Owen Jarus | Source: LiveScience [September 17, 2015]